A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices

Dataset

Title A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices
Authors Stæger Frederik Filip, Mortensen Kristian, Kaufmann Louis, Hirase Hajime, Sigurdsson Björn, Nedergaard Maiken,
Description The full data set and pipeline for constructing the three-dimensional, population-based average of the C57BL/6 mouse brain form DAPI-stained coronal slices. This repository also contains a python implementation of automatic coronal brain slice segmentation. The data set constitutes of all the raw slice images (.tif) in full resolution, the pre-processed version (.nii), the individually reconstructed brain volumes, and the final population-based average.
License Creative Commons CC0 1.0 Public Domain Dedication (https://creativecommons.org/publicdomain/zero/1.0/)
References A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices
Funding
Keywords Neuroscience
Mouse brain template
C57BL/6 brain template
DAPI
Population-based average
Automatic segementation
Data This dataset can be browsed online here or downloaded as a zip archive (105 GiB). The current version of the dataset repository, possibly with updates, can be found here.
DOI 10.12751/g-node.1545d5
Citation This dataset can be cited as:
Stæger F, Mortensen K, Kaufmann L, Hirase H, Nedergaard M, (2019) A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices. G-Node. doi:10.12751/g-node.1545d5
Please also consider citing the material listed in the references
Resource Type Dataset